STRINGSTRING
Slin_3981 protein (Spirosoma linguale) - STRING interaction network
"Slin_3981" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3981ECF subfamily RNA polymerase sigma-24 subunit (202 aa)    
Predicted Functional Partners:
Slin_4980
anti-FecI sigma factor FecR (342 aa)
   
          0.593
Slin_5418
anti-FecI sigma factor FecR (368 aa)
   
          0.577
Slin_1426
anti-FecI sigma factor FecR (361 aa)
   
          0.555
Slin_3980
FG-GAP repeat-containing protein (1126 aa)
              0.536
Slin_3959
anti-FecI sigma factor FecR (376 aa)
   
          0.492
Slin_6566
anti-FecI sigma factor FecR (362 aa)
   
          0.491
Slin_3979
Hypothetical protein (517 aa)
 
          0.469
Slin_2375
ECF subfamily RNA polymerase sigma-24 subunit (213 aa)
   
          0.456
Slin_2763
anti-FecI sigma factor FecR (381 aa)
   
          0.409
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]