STRINGSTRING
Slin_3986 protein (Spirosoma linguale) - STRING interaction network
"Slin_3986" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3986Xylose isomerase (338 aa)    
Predicted Functional Partners:
Slin_3985
Dehydrogenase (852 aa)
 
          0.915
Slin_3987
Short-chain dehydrogenase/reductase SDR (261 aa)
 
          0.768
Slin_4998
Cytochrome C class I (756 aa)
   
          0.756
Slin_2836
Hypothetical protein (469 aa)
   
          0.730
Slin_1262
Dehydrogenase (1068 aa)
   
          0.700
Slin_5004
Hypothetical protein (1010 aa)
   
          0.636
Slin_3513
Hypothetical protein (646 aa)
   
          0.630
Slin_4035
NIPSNAP family containing protein (264 aa)
   
          0.616
Slin_0440
RagB/SusD domain-containing protein (561 aa)
   
          0.611
Slin_4207
RagB/SusD domain-containing protein (451 aa)
   
          0.595
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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