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Slin_3994 protein (Spirosoma linguale) - STRING interaction network
"Slin_3994" - TetR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3994TetR family transcriptional regulator (238 aa)    
Predicted Functional Partners:
Slin_3995
ABC transporter (334 aa)
 
          0.905
Slin_3996
Secretion protein HlyD (450 aa)
 
          0.899
Slin_3997
Hypothetical protein (486 aa)
 
          0.896
Slin_1902
Hypothetical protein (797 aa)
   
          0.757
Slin_5680
Hypothetical protein (125 aa)
 
          0.742
Slin_5875
Hypothetical protein (134 aa)
   
          0.741
Slin_1648
Hypothetical protein (124 aa)
 
          0.734
Slin_2451
Hypothetical protein (257 aa)
   
          0.726
Slin_6134
Hypothetical protein (187 aa)
   
          0.663
Slin_5145
Hypothetical protein (199 aa)
   
          0.644
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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