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Slin_3995 protein (Spirosoma linguale) - STRING interaction network
"Slin_3995" - ABC transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3995ABC transporter (334 aa)    
Predicted Functional Partners:
Slin_3997
Hypothetical protein (486 aa)
 
          0.972
Slin_3996
Secretion protein HlyD (450 aa)
 
          0.972
Slin_3994
TetR family transcriptional regulator (238 aa)
 
          0.905
Slin_2949
NodT family RND efflux system outer membrane lipoprotein (476 aa)
 
   
  0.604
Slin_6550
Outer membrane efflux protein (433 aa)
 
   
  0.592
Slin_1204
RND family efflux transporter MFP subunit (471 aa)
 
   
  0.535
Slin_6534
Hypothetical protein (309 aa)
   
          0.531
Slin_4551
Antibiotic biosynthesis monooxygenase (99 aa)
   
          0.529
Slin_6590
NodT family RND efflux system outer membrane lipoprotein (484 aa)
   
   
  0.517
Slin_5506
Outer membrane efflux protein (451 aa)
   
   
  0.517
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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