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Slin_4006 protein (Spirosoma linguale) - STRING interaction network
"Slin_4006" - OmpA/MotB domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4006OmpA/MotB domain-containing protein (145 aa)    
Predicted Functional Partners:
Slin_4097
OmpA/MotB domain-containing protein (285 aa)
   
          0.747
Slin_1912
Periplasmic component of the Tol biopolymer transport system-like protein (512 aa)
   
 
  0.746
Slin_1730
OmpA/MotB domain-containing protein (322 aa)
   
          0.735
Slin_4937
Polysaccharide export protein (800 aa)
     
    0.626
Slin_2568
Ligand-binding protein (812 aa)
     
    0.626
Slin_5203
OmpA/MotB domain-containing protein (668 aa)
   
          0.608
Slin_1781
OmpA/MotB domain-containing protein (658 aa)
   
          0.586
Slin_1395
FKBP-type peptidylprolyl isomerase (155 aa)
 
        0.545
Slin_1311
OmpA/MotB domain-containing protein (757 aa)
   
          0.532
Slin_5728
OmpA/MotB domain-containing protein (294 aa)
   
 
 
  0.498
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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