STRINGSTRING
Slin_4026 protein (Spirosoma linguale) - STRING interaction network
"Slin_4026" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4026Xylose isomerase (311 aa)    
Predicted Functional Partners:
Slin_1514
Hypothetical protein (312 aa)
   
          0.760
Slin_3405
Hypothetical protein (565 aa)
   
          0.757
Slin_3952
Hypothetical protein (327 aa)
   
          0.718
Slin_6449
Hypothetical protein (857 aa)
   
          0.696
Slin_4692
Hypothetical protein (721 aa)
   
          0.687
Slin_5627
Anthranilate phosphoribosyltransferase-like protein (419 aa)
   
          0.664
Slin_6081
Glycoside hydrolase family protein (480 aa)
   
          0.635
Slin_4027
Hypothetical protein (142 aa)
              0.632
Slin_4022
LmbE family protein (238 aa)
 
          0.628
Slin_6381
N-acylglucosamine 2-epimerase (427 aa)
   
          0.615
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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