STRINGSTRING
Slin_4035 protein (Spirosoma linguale) - STRING interaction network
"Slin_4035" - NIPSNAP family containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4035NIPSNAP family containing protein (264 aa)    
Predicted Functional Partners:
Slin_5000
Dehydrogenase (749 aa)
   
          0.762
Slin_1223
G-D-S-L family lipolytic protein (316 aa)
   
          0.751
Slin_2016
Hypothetical protein (212 aa)
   
          0.747
Slin_3985
Dehydrogenase (852 aa)
   
          0.745
Slin_6210
Heme-binding protein (1141 aa)
   
          0.743
Slin_0957
Hypothetical protein (785 aa)
   
          0.710
Slin_0431
Hypothetical protein (341 aa)
   
          0.687
Slin_5453
Hypothetical protein (924 aa)
   
          0.683
Slin_4084
Hypothetical protein (917 aa)
   
          0.678
Slin_0966
Hypothetical protein (259 aa)
   
          0.678
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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