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Slin_4043 protein (Spirosoma linguale) - STRING interaction network
"Slin_4043" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4043AraC family transcriptional regulator (303 aa)    
Predicted Functional Partners:
Slin_4136
AraC family transcriptional regulator (278 aa)
 
          0.760
Slin_2199
AraC family transcriptional regulator (264 aa)
   
          0.740
Slin_4328
AraC family transcriptional regulator (310 aa)
 
          0.712
Slin_5371
AraC family transcriptional regulator (326 aa)
   
          0.607
Slin_2203
AraC family transcriptional regulator (285 aa)
   
          0.537
Slin_5908
AraC family transcriptional regulator (286 aa)
   
          0.530
Slin_2407
AraC family transcriptional regulator (399 aa)
 
          0.521
Slin_2823
AraC family transcriptional regulator (285 aa)
 
          0.515
Slin_6599
AraC family transcriptional regulator (193 aa)
 
          0.509
Slin_3777
AraC family transcriptional regulator (294 aa)
   
          0.464
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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