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Slin_4054 protein (Spirosoma linguale) - STRING interaction network
"Slin_4054" - Cold-shock DNA-binding domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4054Cold-shock DNA-binding domain-containing protein (148 aa)    
Predicted Functional Partners:
Slin_3045
Hypothetical protein (273 aa)
   
          0.636
Slin_1516
Heavy metal transport/detoxification protein (121 aa)
   
          0.604
Slin_3858
Lipopolysaccharide biosynthesis protein (735 aa)
   
          0.602
Slin_5969
Gliding motility-associated lipoprotein GldH (158 aa)
   
          0.572
Slin_3860
O-antigen polymerase (494 aa)
   
          0.537
Slin_5362
Hypothetical protein (213 aa)
   
          0.521
Slin_3099
Integrase family protein (441 aa)
   
          0.520
Slin_0152
Sugar permease (335 aa)
   
          0.509
Slin_0379
Sugar permease (330 aa)
   
          0.506
Slin_2647
Sugar permease (331 aa)
   
          0.502
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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