STRINGSTRING
Slin_4109 protein (Spirosoma linguale) - STRING interaction network
"Slin_4109" - Rhs element Vgr protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4109Rhs element Vgr protein (576 aa)    
Predicted Functional Partners:
Slin_4111
Rhs family protein-like protein (989 aa)
 
        0.917
Slin_4108
GPW/gp25 family protein (144 aa)
 
          0.905
Slin_4114
Hypothetical protein (96 aa)
 
 
 
  0.905
Slin_4107
Hypothetical protein (631 aa)
 
          0.885
Slin_4112
Hypothetical protein (384 aa)
 
          0.796
Slin_4113
Hypothetical protein (292 aa)
 
          0.793
Slin_4105
Hypothetical protein (314 aa)
 
          0.790
Slin_4117
Hypothetical protein (456 aa)
 
          0.787
Slin_4098
Hypothetical protein (428 aa)
 
          0.787
Slin_4116
Hypothetical protein (152 aa)
 
          0.786
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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