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Slin_4142 protein (Spirosoma linguale) - STRING interaction network
"Slin_4142" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4142AraC family transcriptional regulator (275 aa)    
Predicted Functional Partners:
Slin_4141
Aldo/keto reductase (323 aa)
 
          0.898
Slin_4139
Hypothetical protein (152 aa)
 
          0.609
Slin_5371
AraC family transcriptional regulator (326 aa)
   
          0.564
Slin_4241
AraC family transcriptional regulator (331 aa)
   
          0.520
Slin_6432
RagB/SusD domain-containing protein (542 aa)
   
          0.485
Slin_4140
Hypothetical protein (103 aa)
              0.481
Slin_4138
TetR family transcriptional regulator (203 aa)
 
          0.473
Slin_0485
AraC family transcriptional regulator (309 aa)
   
          0.462
Slin_0205
Hypothetical protein (489 aa)
   
          0.460
Slin_4761
RagB/SusD domain-containing protein (590 aa)
   
          0.449
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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