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Slin_4167 protein (Spirosoma linguale) - STRING interaction network
"Slin_4167" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4167ECF subfamily RNA polymerase sigma-24 subunit (182 aa)    
Predicted Functional Partners:
Slin_5489
ECF subfamily RNA polymerase sigma-24 subunit (189 aa)
   
          0.775
Slin_5681
ECF subfamily RNA polymerase sigma-24 subunit (199 aa)
   
          0.771
Slin_0072
ECF subfamily RNA polymerase sigma-24 subunit (154 aa)
   
          0.764
Slin_6312
ECF subfamily RNA polymerase sigma-24 subunit (162 aa)
   
          0.763
Slin_2069
ECF subfamily RNA polymerase sigma-24 subunit (162 aa)
   
          0.762
Slin_5546
ECF subfamily RNA polymerase sigma-24 subunit (246 aa)
   
          0.722
Slin_2375
ECF subfamily RNA polymerase sigma-24 subunit (213 aa)
   
          0.702
Slin_2762
ECF subfamily RNA polymerase sigma-24 subunit (201 aa)
   
          0.631
Slin_4193
ECF subfamily RNA polymerase sigma-24 subunit (200 aa)
   
          0.572
Slin_6285
anti-FecI sigma factor FecR (333 aa)
   
 
  0.570
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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