STRINGSTRING
Slin_4196 protein (Spirosoma linguale) - STRING interaction network
"Slin_4196" - Glycoside hydrolase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4196Glycoside hydrolase (1002 aa)    
Predicted Functional Partners:
Slin_0923
Hypothetical protein (418 aa)
          0.874
Slin_4197
DinB family protein (154 aa)
              0.859
murQ
RpiR family transcriptional regulator; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate (270 aa)
 
     
  0.845
Slin_0459
Hypothetical protein (390 aa)
          0.836
Slin_6212
N-acetylglucosamine-6-phosphate deacetylase (398 aa)
 
   
  0.714
Slin_2038
Hypothetical protein (1024 aa)
   
          0.705
Slin_2932
N-acetylglucosamine-6-phosphate deacetylase (389 aa)
 
   
  0.701
Slin_5211
Hypothetical protein (333 aa)
   
          0.669
Slin_4198
PAS/PAC sensor hybrid histidine kinase (1185 aa)
 
     
  0.668
Slin_5567
Rhomboid family protein (308 aa)
 
          0.657
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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