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Slin_4204 protein (Spirosoma linguale) - STRING interaction network
"Slin_4204" - DNA-(apurinic or apyrimidinic site) lyase in Spirosoma linguale
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Slin_4204DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity (220 aa)    
Predicted Functional Partners:
Slin_0521
Exodeoxyribonuclease III Xth (254 aa)
 
 
  0.987
Slin_1733
HhH-GPD family protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity (241 aa)
 
   
 
0.856
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (215 aa)
 
   
 
0.844
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (682 aa)
 
   
  0.744
Slin_2830
PHP domain-containing protein (577 aa)
 
 
  0.700
Slin_0543
DNA polymerase I (1024 aa)
   
 
  0.694
Slin_4205
OmpA/MotB domain-containing protein (427 aa)
     
      0.627
Slin_4152
Cyanophycin synthetase (895 aa)
         
  0.588
Slin_5025
Crp/Fnr family transcriptional regulator (1056 aa)
 
        0.550
hisB
Histidinol-phosphatase (382 aa)
     
 
  0.540
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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