STRINGSTRING
Slin_4228 protein (Spirosoma linguale) - STRING interaction network
"Slin_4228" - Lanthionine synthetase C family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4228Lanthionine synthetase C family protein (661 aa)    
Predicted Functional Partners:
Slin_4229
ABC transporter (726 aa)
         
  0.727
Slin_1591
Glucose/sorbosone dehydrogenase (414 aa)
   
          0.540
Slin_2706
Hypothetical protein (928 aa)
   
          0.469
Slin_4878
PKD domain-containing protein (1081 aa)
   
          0.468
Slin_5485
Cytochrome C class I (561 aa)
   
          0.447
Slin_1830
Glucose/sorbosone dehydrogenase (442 aa)
   
          0.428
Slin_2404
Hypothetical protein (287 aa)
   
          0.415
Slin_4231
Lantibiotic dehydratase domain-containing protein (962 aa)
 
          0.413
Slin_6371
O-methyltransferase family 2 (351 aa)
   
          0.405
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (14%) [HD]