STRINGSTRING
Slin_4238 protein (Spirosoma linguale) - STRING interaction network
"Slin_4238" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4238TonB-dependent receptor plug (1101 aa)    
Predicted Functional Partners:
Slin_4237
Hypothetical protein (578 aa)
 
          0.923
Slin_1165
Hypothetical protein (499 aa)
 
 
      0.864
Slin_1168
Hypothetical protein (481 aa)
 
          0.822
Slin_6040
Hypothetical protein (483 aa)
 
          0.808
Slin_3992
Hypothetical protein (532 aa)
 
          0.786
Slin_0205
Hypothetical protein (489 aa)
   
          0.770
Slin_0202
Hypothetical protein (487 aa)
   
          0.769
Slin_0802
Hypothetical protein (538 aa)
   
          0.768
Slin_3399
Hypothetical protein (531 aa)
   
          0.760
Slin_4800
Hypothetical protein (498 aa)
   
          0.757
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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