STRINGSTRING
Slin_4254 protein (Spirosoma linguale) - STRING interaction network
"Slin_4254" - Carbamoyltransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4254Carbamoyltransferase (620 aa)    
Predicted Functional Partners:
Slin_4252
Hypothetical protein (49 aa)
 
          0.957
Slin_4253
Hypothetical protein (384 aa)
              0.811
Slin_4251
Membrane protein (120 aa)
              0.777
Slin_4255
Hypothetical protein (348 aa)
              0.512
Slin_3105
Group 1 glycosyl transferase (328 aa)
 
          0.470
Slin_3107
Histidinol-phosphate phosphatase (199 aa)
 
          0.437
Slin_2969
Peptidase C14 caspase catalytic subunit p20 (261 aa)
   
          0.428
Slin_4250
Methionine synthase (1261 aa)
              0.407
Slin_6505
PfkB domain-containing protein (333 aa)
   
        0.403
Slin_3466
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose (159 aa)
   
        0.403
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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