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Slin_4312 protein (Spirosoma linguale) - STRING interaction network
"Slin_4312" - LysR family transcriptional regulator in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4312LysR family transcriptional regulator (307 aa)    
Predicted Functional Partners:
Slin_4313
Isocitrate dehydrogenase (456 aa)
 
          0.707
Slin_1943
LysR family transcriptional regulator (304 aa)
   
        0.665
Slin_0337
LysR family transcriptional regulator (305 aa)
   
        0.615
Slin_1124
Hypothetical protein (831 aa)
 
          0.565
Slin_1845
Hypothetical protein (98 aa)
   
          0.509
Slin_0133
C4-dicarboxylate transporter/malic acid transport protein (351 aa)
 
          0.508
Slin_3019
Hypothetical protein (197 aa)
   
          0.493
Slin_1643
Rhodopsin (250 aa)
   
          0.473
Slin_2267
Magnesium and cobalt transporter CorA; Mediates influx of magnesium ions (360 aa)
     
      0.471
Slin_0783
Magnesium and cobalt transporter CorA; Mediates influx of magnesium ions (316 aa)
     
      0.471
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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