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Slin_4320 protein (Spirosoma linguale) - STRING interaction network
"Slin_4320" - Glycoside hydrolase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4320Glycoside hydrolase family protein (330 aa)    
Predicted Functional Partners:
Slin_0536
Glycoside hydrolase family protein (393 aa)
   
          0.753
Slin_6449
Hypothetical protein (857 aa)
   
          0.738
Slin_2648
ADP-ribosylation/crystallin J1 (543 aa)
   
          0.729
Slin_0971
Hypothetical protein (932 aa)
   
          0.702
Slin_3990
Peptidase M14 carboxypeptidase A (942 aa)
   
          0.698
Slin_2413
RagB/SusD domain-containing protein (480 aa)
   
          0.698
Slin_2579
Hypothetical protein (275 aa)
   
          0.687
Slin_4641
Hypothetical protein (836 aa)
   
          0.667
Slin_4714
Lantibiotic dehydratase domain-containing protein (1055 aa)
   
          0.666
Slin_2143
AraC family transcriptional regulator (269 aa)
   
          0.654
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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