STRINGSTRING
Slin_4354 protein (Spirosoma linguale) - STRING interaction network
"Slin_4354" - Ligand-binding protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4354Ligand-binding protein (266 aa)    
Predicted Functional Partners:
Slin_4355
Capsular exopolysaccharide family protein (767 aa)
 
          0.949
Slin_6307
Capsular exopolysaccharide family protein (772 aa)
 
     
  0.885
Slin_4089
Capsular exopolysaccharide family protein (759 aa)
 
          0.812
Slin_6398
Capsular exopolysaccharide family protein (775 aa)
 
          0.811
Slin_0726
Capsular exopolysaccharide family protein (783 aa)
 
          0.811
Slin_2664
Lipopolysaccharide biosynthesis protein (345 aa)
   
          0.778
Slin_4356
Sugar transferase (225 aa)
 
          0.604
Slin_6421
PHP domain-containing protein (255 aa)
 
          0.557
Slin_4359
Cupin (114 aa)
              0.463
Slin_4358
NAD-dependent epimerase/dehydratase (327 aa)
              0.463
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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