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Slin_4394 protein (Spirosoma linguale) - STRING interaction network
"Slin_4394" - Carboxyl-terminal protease in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4394Carboxyl-terminal protease (575 aa)    
Predicted Functional Partners:
Slin_1779
Peptidase M23 (354 aa)
 
 
  0.714
Slin_4398
Peptidase M23 (475 aa)
 
 
  0.681
Slin_0806
PpiC-type peptidyl-prolyl cis-trans isomerase (458 aa)
 
   
  0.669
Slin_0978
Peptidase M23 (689 aa)
 
 
  0.635
Slin_1641
Peptidase M23 (286 aa)
 
 
  0.611
Slin_5448
Phospholipid/glycerol acyltransferase (241 aa)
 
        0.564
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (825 aa)
 
          0.555
Slin_0807
PpiC-type peptidyl-prolyl cis-trans isomerase (797 aa)
 
   
  0.555
Slin_6234
Peptidase M23 (446 aa)
 
 
  0.549
Slin_2087
DNA/RNA non-specific endonuclease (724 aa)
   
   
  0.545
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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