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Slin_4409 protein (Spirosoma linguale) - STRING interaction network
"Slin_4409" - MarR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4409MarR family transcriptional regulator (161 aa)    
Predicted Functional Partners:
Slin_4408
Aldehyde dehydrogenase (457 aa)
              0.674
Slin_4412
Outer membrane efflux protein (444 aa)
 
          0.587
Slin_4410
Secretion protein HlyD (370 aa)
              0.585
Slin_4411
EmrB/QacA subfamily drug resistance transporter (537 aa)
              0.584
Slin_6097
Histidine kinase (469 aa)
   
          0.525
Slin_0865
Hypothetical protein (151 aa)
   
          0.461
Slin_6321
Homogentisate 12-dioxygenase (396 aa)
   
          0.433
Slin_0883
Hypothetical protein (107 aa)
   
          0.427
Slin_6099
Hypothetical protein (90 aa)
   
          0.412
Slin_4231
Lantibiotic dehydratase domain-containing protein (962 aa)
   
          0.407
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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