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Slin_4420 protein (Spirosoma linguale) - STRING interaction network
"Slin_4420" - RNA-binding S4 domain-containing protein in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4420RNA-binding S4 domain-containing protein (638 aa)    
Predicted Functional Partners:
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis (435 aa)
 
   
  0.862
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (241 aa)
 
   
  0.758
Slin_1390
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (348 aa)
 
 
  0.695
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs (349 aa)
 
      0.622
Slin_4419
Deoxyribose-phosphate aldolase/phospho-2-dehydro- 3-deoxyheptonate aldolase (217 aa)
   
        0.622
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (209 aa)
 
 
  0.614
prfB
Hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (358 aa)
 
      0.589
Slin_5247
Translation elongation factor P (187 aa)
 
      0.568
Slin_5663
RNA binding S1 domain-containing protein (595 aa)
   
      0.566
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA (209 aa)
 
   
  0.566
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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