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Slin_4426 protein (Spirosoma linguale) - STRING interaction network
"Slin_4426" - MarR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4426MarR family transcriptional regulator (156 aa)    
Predicted Functional Partners:
Slin_4424
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (811 aa)
 
          0.770
Slin_5875
Hypothetical protein (134 aa)
   
          0.639
Slin_1361
Gliding motility-associated protein GldC (118 aa)
   
          0.630
Slin_1599
ATP-dependent Clp protease adaptor protein ClpS (92 aa)
   
          0.618
Slin_5518
Chromosome segregation ATPase (1100 aa)
   
          0.577
Slin_4425
Hypothetical protein (160 aa)
              0.570
Slin_4879
Hypothetical protein (170 aa)
   
          0.549
Slin_5521
Hypothetical protein (607 aa)
   
          0.547
Slin_0708
Thioesterase superfamily protein (153 aa)
   
          0.542
Slin_1217
Hypothetical protein (700 aa)
   
          0.517
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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