STRINGSTRING
Slin_4451 protein (Spirosoma linguale) - STRING interaction network
"Slin_4451" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4451Hypothetical protein (106 aa)    
Predicted Functional Partners:
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit (142 aa)
              0.866
Slin_4450
Hypothetical protein (68 aa)
              0.859
Slin_4452
Hypothetical protein (113 aa)
              0.692
Slin_4883
Hypothetical protein (185 aa)
   
          0.647
Slin_4381
TonB-dependent receptor (1071 aa)
   
          0.636
Slin_0106
TonB-dependent receptor plug (1161 aa)
   
          0.628
Slin_4042
TonB-dependent receptor (1026 aa)
   
          0.618
Slin_6567
TonB-dependent receptor plug (1155 aa)
   
          0.613
Slin_0259
Crp/Fnr family transcriptional regulator (179 aa)
   
          0.597
Slin_2412
TonB-dependent receptor (1029 aa)
   
          0.593
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (6%) [HD]