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Slin_4460 protein (Spirosoma linguale) - STRING interaction network
"Slin_4460" - Nucleoside recognition protein domain-containing protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4460Nucleoside recognition protein domain-containing protein (411 aa)    
Predicted Functional Partners:
Slin_4461
Peptidase M15D vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide (244 aa)
              0.659
Slin_4459
Hypothetical protein (56 aa)
              0.640
Slin_5446
Polysaccharide biosynthesis protein (511 aa)
 
          0.572
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (432 aa)
         
  0.556
Slin_4420
RNA-binding S4 domain-containing protein (638 aa)
              0.515
Slin_0522
Pseudouridine synthase (198 aa)
              0.515
Slin_5643
Hypothetical protein (145 aa)
   
          0.486
Slin_3374
Peptidase U61 LD-carboxypeptidase A (341 aa)
              0.461
Slin_0209
Peptidase U61 LD-carboxypeptidase A (303 aa)
              0.461
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (137 aa)
              0.454
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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