STRINGSTRING
Slin_4474 protein (Spirosoma linguale) - STRING interaction network
"Slin_4474" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4474TonB-dependent receptor (855 aa)    
Predicted Functional Partners:
Slin_2569
Hypothetical protein (373 aa)
   
          0.631
Slin_0643
Hypothetical protein (290 aa)
   
          0.609
Slin_2732
Hypothetical protein (449 aa)
   
          0.587
Slin_2374
anti-FecI sigma factor FecR (351 aa)
 
   
  0.554
Slin_2733
Hypothetical protein (570 aa)
   
          0.550
Slin_5799
anti-FecI sigma factor FecR (368 aa)
   
          0.539
Slin_0105
anti-FecI sigma factor FecR (339 aa)
 
   
  0.526
Slin_5280
Hypothetical protein (219 aa)
   
          0.520
Slin_3478
Class I and II aminotransferase (379 aa)
   
      0.519
Slin_1134
Periplasmic binding protein (246 aa)
   
   
  0.515
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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