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Slin_4475 protein (Spirosoma linguale) - STRING interaction network
"Slin_4475" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4475TonB-dependent receptor (955 aa)    
Predicted Functional Partners:
Slin_2230
Hypothetical protein (417 aa)
   
          0.715
Slin_5609
PDZ/DHR/GLGF domain-containing protein (421 aa)
   
          0.704
Slin_1648
Hypothetical protein (124 aa)
   
          0.684
Slin_5680
Hypothetical protein (125 aa)
   
          0.676
Slin_0540
Fatty acid hydroxylase (288 aa)
   
          0.603
Slin_6159
Integrase family protein (387 aa)
   
          0.584
Slin_5679
Hypothetical protein (91 aa)
   
          0.580
Slin_2915
Hypothetical protein (345 aa)
   
          0.562
Slin_1208
ECF subfamily RNA polymerase sigma-24 subunit (195 aa)
   
          0.559
Slin_4879
Hypothetical protein (170 aa)
   
          0.549
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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