STRINGSTRING
Slin_4492 protein (Spirosoma linguale) - STRING interaction network
"Slin_4492" - Outer membrane efflux protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4492Outer membrane efflux protein (455 aa)    
Predicted Functional Partners:
Slin_4493
RND family efflux transporter MFP subunit (367 aa)
 
 
  0.934
Slin_4494
Acriflavin resistance protein (1049 aa)
 
 
  0.888
Slin_0822
RND family efflux transporter MFP subunit (390 aa)
 
 
  0.765
Slin_4653
Hypothetical protein (413 aa)
 
 
  0.760
Slin_0794
Hypothetical protein (412 aa)
 
 
  0.758
Slin_6592
RND family efflux transporter MFP subunit (378 aa)
 
 
  0.741
Slin_4491
TetR family transcriptional regulator (209 aa)
              0.734
Slin_2361
RND family efflux transporter MFP subunit (372 aa)
 
 
  0.732
Slin_2818
RND family efflux transporter MFP subunit (349 aa)
 
 
  0.710
Slin_3718
RND family efflux transporter MFP subunit (353 aa)
 
 
  0.704
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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