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Slin_4500 protein (Spirosoma linguale) - STRING interaction network
"Slin_4500" - Lytic transglycosylase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4500Lytic transglycosylase (523 aa)    
Predicted Functional Partners:
gatA
glutamyl-tRNA(Gln) amidotransferase subunit alpha; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) (479 aa)
              0.722
Slin_4501
Hypothetical protein (137 aa)
              0.718
Slin_5889
Phosphatase KdsC (170 aa)
 
   
  0.638
Slin_0543
DNA polymerase I (1024 aa)
     
 
  0.604
Slin_4434
Outer membrane protein assembly complex, YaeT protein (865 aa)
 
      0.582
Slin_4205
OmpA/MotB domain-containing protein (427 aa)
   
   
  0.578
Slin_3124
Hypothetical protein (251 aa)
   
          0.572
Slin_3220
Glycosyl transferase family protein (785 aa)
 
 
      0.562
Slin_6025
PpiC-type peptidyl-prolyl cis-trans isomerase (706 aa)
   
          0.558
Slin_1730
OmpA/MotB domain-containing protein (322 aa)
   
   
  0.551
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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