STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4537TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ccs:CCNA_00305 cobalt-zinc-cadmium resistance protein CzcD. (309 aa)    
Predicted Functional Partners:
Slin_1852
PFAM: flavin-containing monooxygenase FMO; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mll7934 dimethylaniline monooxygenase.
 
    0.652
Slin_1661
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bba:Bd0368 cation efflux system protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.560
Slin_6135
PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: rma:Rmag_0708 cell division protein SufI.
 
  
 0.466
Slin_4536
TIGRFAM: PAS sensor protein; KEGG: cak:Caul_1140 putative PAS/PAC sensor protein.
       0.449
Slin_4538
PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: hypothetical protein LOC100011554.
       0.425
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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