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Slin_4540 protein (Spirosoma linguale) - STRING interaction network
"Slin_4540" - Coagulation factor 5/8 type domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4540Coagulation factor 5/8 type domain-containing protein (616 aa)    
Predicted Functional Partners:
Slin_6054
RagB/SusD domain-containing protein (499 aa)
 
          0.668
Slin_4539
Hypothetical protein (151 aa)
              0.659
Slin_3032
Mannan endo-1,4-beta-mannosidase (385 aa)
   
          0.591
Slin_0594
Hypothetical protein (1053 aa)
   
          0.564
Slin_1464
Hypothetical protein (296 aa)
   
          0.563
Slin_2036
Hypothetical protein (404 aa)
   
          0.560
Slin_3951
RagB/SusD domain-containing protein (491 aa)
   
          0.537
Slin_3654
TonB-dependent receptor plug (810 aa)
   
          0.528
Slin_0637
Hypothetical protein (1066 aa)
   
          0.518
Slin_3360
Glycoside hydrolase family protein (522 aa)
   
          0.512
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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