STRINGSTRING
Slin_4543 protein (Spirosoma linguale) - STRING interaction network
"Slin_4543" - Outer membrane efflux protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4543Outer membrane efflux protein (430 aa)    
Predicted Functional Partners:
Slin_4544
Hypothetical protein (372 aa)
 
          0.796
Slin_6418
Glycosyl transferase family protein (537 aa)
   
          0.733
Slin_4545
Secretion protein HlyD (335 aa)
 
          0.731
Slin_4546
ABC transporter (238 aa)
              0.661
Slin_5627
Anthranilate phosphoribosyltransferase-like protein (419 aa)
   
          0.622
Slin_2362
Outer membrane efflux protein (446 aa)
   
          0.570
Slin_4221
RagB/SusD domain-containing protein (457 aa)
   
          0.563
Slin_1546
XisI protein (115 aa)
   
          0.560
Slin_6010
Outer membrane efflux protein (462 aa)
   
          0.557
Slin_4547
MarR family transcriptional regulator (235 aa)
 
          0.555
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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