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Slin_4547 protein (Spirosoma linguale) - STRING interaction network
"Slin_4547" - MarR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4547MarR family transcriptional regulator (235 aa)    
Predicted Functional Partners:
Slin_4548
Major facilitator superfamily protein (400 aa)
              0.763
Slin_4544
Hypothetical protein (372 aa)
 
          0.700
Slin_5723
TetR family transcriptional regulator (177 aa)
   
          0.670
Slin_2732
Hypothetical protein (449 aa)
   
          0.650
Slin_1746
Hypothetical protein (191 aa)
   
          0.635
Slin_3020
Histidine kinase (1282 aa)
   
          0.617
Slin_5064
Hypothetical protein (853 aa)
   
          0.602
Slin_1841
Hypothetical protein (438 aa)
   
          0.590
Slin_4391
Radical SAM protein (327 aa)
   
          0.580
Slin_3620
Hypothetical protein (200 aa)
   
          0.580
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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