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Slin_4550 protein (Spirosoma linguale) - STRING interaction network
"Slin_4550" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4550TonB-dependent receptor plug (1192 aa)    
Predicted Functional Partners:
Slin_0801
TonB-dependent receptor plug (1116 aa)
   
          0.761
Slin_6188
TonB family protein (804 aa)
   
          0.686
Slin_0802
Hypothetical protein (538 aa)
   
          0.682
Slin_4961
Hypothetical protein (257 aa)
   
          0.673
Slin_4962
Hypothetical protein (398 aa)
   
          0.672
Slin_4551
Antibiotic biosynthesis monooxygenase (99 aa)
              0.655
Slin_3399
Hypothetical protein (531 aa)
   
          0.655
Slin_6040
Hypothetical protein (483 aa)
   
          0.637
Slin_1130
PDZ/DHR/GLGF domain-containing protein (789 aa)
   
          0.602
Slin_4221
RagB/SusD domain-containing protein (457 aa)
   
          0.601
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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