STRINGSTRING
Slin_4561 protein (Spirosoma linguale) - STRING interaction network
"Slin_4561" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4561TonB-dependent receptor (824 aa)    
Predicted Functional Partners:
Slin_2814
Hypothetical protein (1224 aa)
   
          0.675
Slin_1565
Transporter permease (355 aa)
 
   
  0.616
Slin_4560
Hypothetical protein (122 aa)
              0.616
Slin_3265
Hypothetical protein (127 aa)
   
          0.616
Slin_5087
MotA/TolQ/ExbB proton channel (277 aa)
 
   
  0.604
Slin_4282
Hypothetical protein (432 aa)
   
          0.593
Slin_1304
Hypothetical protein (301 aa)
   
          0.584
Slin_1490
Hypothetical protein (348 aa)
   
          0.579
Slin_0546
Hypothetical protein (321 aa)
   
          0.575
Slin_2108
Glycoside hydrolase family protein (650 aa)
   
          0.570
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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