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Slin_4568 protein (Spirosoma linguale) - STRING interaction network
"Slin_4568" - PARP catalytic domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4568PARP catalytic domain-containing protein (446 aa)    
Predicted Functional Partners:
Slin_4570
Hypothetical protein (39 aa)
              0.859
Slin_4569
Hypothetical protein (82 aa)
              0.859
Slin_3827
Hypothetical protein (292 aa)
   
          0.665
Slin_4518
Hypothetical protein (451 aa)
   
          0.638
Slin_4567
Hypothetical protein (131 aa)
              0.628
Slin_1553
AMP-dependent synthetase and ligase (495 aa)
   
          0.613
Slin_5923
Hypothetical protein (461 aa)
   
          0.607
Slin_4571
Hypothetical protein (150 aa)
              0.601
Slin_6446
Hypothetical protein (270 aa)
   
          0.595
Slin_6485
Peptidase C1A papain (494 aa)
   
          0.588
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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