STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4634KEGG: cps:CPS_4697 hypothetical protein. (288 aa)    
Predicted Functional Partners:
Slin_4633
PFAM: HEAT domain containing protein; KEGG: aeh:Mlg_1635 putative transmembrane anti- sigma factor.
 
     0.921
Slin_4632
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: afw:Anae109_0250 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.885
Slin_4635
KEGG: cps:CPS_4697 hypothetical protein.
 
    
0.846
Slin_4636
PFAM: beta-lactamase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: smt:Smal_0071 beta-lactamase.
  
    0.777
Slin_3340
Hypothetical protein.
 
     0.769
Slin_4637
PFAM: beta-lactamase; SMART: Tetratricopeptide repeat; KEGG: cak:Caul_4667 beta-lactamase.
  
    0.626
Slin_4644
KEGG: cps:CPS_4697 hypothetical protein.
 
    0.593
Slin_1759
PFAM: transcriptional regulator PadR family protein; KEGG: pmy:Pmen_2227 PadR family transcriptional regulator.
 
     0.564
Slin_0933
PFAM: transcriptional regulator PadR family protein.
 
     0.554
Slin_0949
PFAM: transcriptional regulator PadR family protein; KEGG: pmy:Pmen_2227 PadR family transcriptional regulator.
 
     0.541
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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