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Slin_4648 protein (Spirosoma linguale) - STRING interaction network
"Slin_4648" - Biopolymertransporter ExbD/TolR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4648Biopolymertransporter ExbD/TolR (193 aa)    
Predicted Functional Partners:
Slin_5088
Biopolymertransporter ExbD/TolR (208 aa)
   
          0.778
Slin_5093
Hypothetical protein (590 aa)
   
          0.772
Slin_4799
Hypothetical protein (563 aa)
   
          0.771
Slin_5087
MotA/TolQ/ExbB proton channel (277 aa)
   
          0.756
Slin_5092
Phosphate ABC transporter substrate-binding protein (313 aa)
   
          0.723
Slin_4649
D-lactate dehydrogenase (1034 aa)
 
          0.701
Slin_1524
GtrA family protein (125 aa)
   
          0.699
Slin_5362
Hypothetical protein (213 aa)
   
          0.670
Slin_1527
PA-phosphatase-like phosphoesterase (311 aa)
   
          0.659
Slin_6492
Metal dependent phosphohydrolase (420 aa)
   
          0.536
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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