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Slin_4665 protein (Spirosoma linguale) - STRING interaction network
"Slin_4665" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4665TonB-dependent receptor (739 aa)    
Predicted Functional Partners:
Slin_4530
Peptidase M75, Imelysin (384 aa)
 
          0.849
Slin_4529
Hypothetical protein (390 aa)
 
          0.839
Slin_4531
Vitamin K-dependent gamma-carboxylase (449 aa)
 
          0.838
Slin_0735
Xylose isomerase (312 aa)
   
          0.722
Slin_1219
anti-FecI sigma factor FecR (333 aa)
 
 
  0.689
Slin_3951
RagB/SusD domain-containing protein (491 aa)
   
          0.681
Slin_4664
Hypothetical protein (298 aa)
              0.662
Slin_4987
Hypothetical protein (296 aa)
   
          0.657
Slin_0105
anti-FecI sigma factor FecR (339 aa)
 
 
  0.638
Slin_2382
Hypothetical protein (498 aa)
   
          0.638
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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