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Slin_4747 protein (Spirosoma linguale) - STRING interaction network
"Slin_4747" - TM helix repeat-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4747TM helix repeat-containing protein (275 aa)    
Predicted Functional Partners:
Slin_4745
ECF subfamily RNA polymerase sigma-24 subunit (202 aa)
         
  0.892
Slin_4746
Hypothetical protein (68 aa)
              0.859
Slin_4748
Hypothetical protein (318 aa)
              0.587
Slin_4131
Hypothetical protein (165 aa)
   
          0.557
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (277 aa)
         
  0.506
Slin_4749
Large conductance mechanosensitive channel protein (110 aa)
         
  0.497
Slin_5627
Anthranilate phosphoribosyltransferase-like protein (419 aa)
   
          0.488
Slin_2709
ECF subfamily RNA polymerase sigma-24 subunit (196 aa)
   
          0.456
Slin_5064
Hypothetical protein (853 aa)
   
          0.431
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP (510 aa)
   
   
  0.421
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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