STRINGSTRING
Slin_4781 protein (Spirosoma linguale) - STRING interaction network
"Slin_4781" - anti-FecI sigma factor FecR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4781anti-FecI sigma factor FecR (345 aa)    
Predicted Functional Partners:
Slin_4780
ECF subfamily RNA polymerase sigma-24 subunit (194 aa)
 
 
  0.937
Slin_0104
LuxR family transcriptional regulator (207 aa)
 
 
  0.882
Slin_4981
ECF subfamily RNA polymerase sigma-24 subunit (193 aa)
 
 
  0.872
Slin_1218
ECF subfamily RNA polymerase sigma-24 subunit (227 aa)
   
          0.773
Slin_4782
TonB-dependent receptor (1144 aa)
 
          0.746
Slin_6284
ECF subfamily RNA polymerase sigma-24 subunit (227 aa)
   
          0.745
Slin_4783
RagB/SusD domain-containing protein (548 aa)
 
          0.699
Slin_0743
Hypothetical protein (476 aa)
   
          0.634
Slin_6565
ECF subfamily RNA polymerase sigma-24 subunit (196 aa)
   
          0.593
Slin_0744
TonB-dependent receptor plug (1088 aa)
   
          0.580
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]