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Slin_4804 protein (Spirosoma linguale) - STRING interaction network
"Slin_4804" - Class I and II aminotransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4804Class I and II aminotransferase (413 aa)    
Predicted Functional Partners:
Slin_4514
Aspartate kinase (818 aa)
 
 
  0.857
Slin_5432
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (273 aa)
   
  0.769
Slin_2319
Glutamate synthase (1524 aa)
   
 
  0.751
Slin_4803
Hypothetical protein (187 aa)
              0.741
Slin_4802
Short-chain dehydrogenase/reductase SDR (267 aa)
              0.741
Slin_2566
Chorismate mutase (357 aa)
 
   
  0.679
Slin_4152
Cyanophycin synthetase (895 aa)
 
     
  0.543
Slin_4807
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen (207 aa)
              0.543
Slin_4806
Hypothetical protein (313 aa)
              0.543
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (424 aa)
 
   
  0.541
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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