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Slin_4809 protein (Spirosoma linguale) - STRING interaction network
"Slin_4809" - phytanoyl-CoA dioxygenase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4809phytanoyl-CoA dioxygenase (273 aa)    
Predicted Functional Partners:
Slin_4808
Fatty acid hydroxylase (408 aa)
 
          0.804
Slin_2732
Hypothetical protein (449 aa)
   
          0.753
Slin_6550
Outer membrane efflux protein (433 aa)
   
          0.731
Slin_3817
NmrA family protein (297 aa)
   
          0.721
Slin_2730
RagB/SusD domain-containing protein (447 aa)
   
          0.711
Slin_4564
Hypothetical protein (171 aa)
   
          0.703
Slin_2733
Hypothetical protein (570 aa)
   
          0.691
Slin_4018
NmrA family protein (299 aa)
   
          0.690
Slin_0846
Metallophosphoesterase (371 aa)
   
          0.683
Slin_1923
Hypothetical protein (218 aa)
   
          0.673
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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