STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4809PFAM: Phytanoyl-CoA dioxygenase; KEGG: hypothetical protein. (273 aa)    
Predicted Functional Partners:
Slin_4224
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.742
Slin_4223
Hypothetical protein.
  
     0.741
Slin_1769
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.730
Slin_4808
PFAM: fatty acid hydroxylase; KEGG: lpn:lpg2235 sterol desaturase.
       0.678
Slin_4561
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: net:Neut_2038 TonB-dependent receptor.
  
     0.646
Slin_2085
PFAM: aminoglycoside phosphotransferase; histidine kinase A domain protein; SMART: histidine kinase A domain protein; KEGG: rlt:Rleg2_0661 aminoglycoside phosphotransferase.
  
     0.606
Slin_1634
KEGG: rfr:Rfer_1764 hypothetical protein.
  
     0.604
Slin_5991
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: hypothetical protein.
  
     0.598
Slin_0214
Hypothetical protein; KEGG: lhk:LHK_01290 DUF2029 domain containing protein.
  
    0.594
Slin_2448
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: atc:AGR_L_1280 probable short-chain dehydrogenase PA0658; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.593
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.