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Slin_4813 protein (Spirosoma linguale) - STRING interaction network
"Slin_4813" - dTDP-4-dehydrorhamnose 3,5-epimerase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4813dTDP-4-dehydrorhamnose 3,5-epimerase (173 aa)    
Predicted Functional Partners:
Slin_4815
dTDP-4-dehydrorhamnose reductase (299 aa)
 
 
  0.985
Slin_5840
dTDP-glucose 4,6-dehydratase (352 aa)
 
 
  0.965
Slin_3525
NAD-dependent epimerase/dehydratase (326 aa)
   
  0.957
Slin_4814
Family 2 glycosyl transferase (308 aa)
   
   
  0.900
Slin_4812
Hypothetical protein (86 aa)
              0.859
Slin_0434
dTDP-4-dehydrorhamnose 3,5-epimerase (181 aa)
         
    0.800
Slin_4165
UDP-galactopyranose mutase (373 aa)
   
   
  0.734
Slin_6103
Protoporphyrinogen oxidase (454 aa)
   
        0.715
Slin_6090
Hypothetical protein (398 aa)
   
 
  0.712
Slin_2570
ABC transporter (279 aa)
 
   
  0.708
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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