STRINGSTRING
Slin_4900 protein (Spirosoma linguale) - STRING interaction network
"Slin_4900" - Glycosyl hydrolase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4900Glycosyl hydrolase (1060 aa)    
Predicted Functional Partners:
Slin_1571
TonB-dependent receptor (804 aa)
   
          0.698
Slin_4763
Amidohydrolase (568 aa)
   
          0.637
Slin_5850
Hypothetical protein (785 aa)
   
          0.623
Slin_2536
Hypothetical protein (741 aa)
   
          0.616
Slin_0262
Xaa-Pro aminopeptidase (468 aa)
   
          0.603
Slin_4490
Hypothetical protein (843 aa)
   
          0.585
Slin_4469
Peptidase S45 penicillin amidase (738 aa)
   
          0.573
Slin_3379
Hypothetical protein (906 aa)
   
          0.555
Slin_0325
Cell surface receptor IPT/TIG domain-containing protein (597 aa)
   
          0.549
Slin_2535
Peptidase M14 carboxypeptidase A (860 aa)
   
          0.547
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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