STRINGSTRING
Slin_4976 protein (Spirosoma linguale) - STRING interaction network
"Slin_4976" - Endonuclease/exonuclease/phosphatase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4976Endonuclease/exonuclease/phosphatase (266 aa)    
Predicted Functional Partners:
Slin_4977
Metallophosphoesterase (396 aa)
          0.916
Slin_3385
Hypothetical protein (267 aa)
 
          0.771
Slin_4978
RagB/SusD domain-containing protein (576 aa)
 
          0.735
Slin_4979
TonB-dependent receptor plug (1188 aa)
 
          0.662
Slin_4975
Hypothetical protein (401 aa)
              0.550
Slin_4762
Endonuclease/exonuclease/phosphatase (299 aa)
   
          0.442
Slin_5282
Malto-oligosyltrehalose synthase (1411 aa)
   
        0.439
Slin_4792
Trehalose-phosphatase (738 aa)
     
        0.437
Slin_6287
RagB/SusD domain-containing protein (531 aa)
   
          0.422
Slin_6337
Hypothetical protein (218 aa)
   
          0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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