STRINGSTRING
Slin_4982 protein (Spirosoma linguale) - STRING interaction network
"Slin_4982" - Fatty acid desaturase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_4982Fatty acid desaturase (343 aa)    
Predicted Functional Partners:
Slin_2261
Glucan endo-1,6-beta-glucosidase (514 aa)
         
    0.900
Slin_5242
Inositol oxygenase (284 aa)
   
        0.677
Slin_3482
Fatty acid hydroxylase (215 aa)
 
        0.629
Slin_4977
Metallophosphoesterase (396 aa)
 
          0.536
Slin_2749
NmrA family protein (298 aa)
   
          0.535
Slin_6321
Homogentisate 12-dioxygenase (396 aa)
     
        0.522
Slin_5730
Proline dehydrogenase (363 aa)
   
          0.496
Slin_0846
Metallophosphoesterase (371 aa)
   
          0.490
Slin_4981
ECF subfamily RNA polymerase sigma-24 subunit (193 aa)
              0.458
Slin_4983
Hypothetical protein (230 aa)
              0.432
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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