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Slin_5058 protein (Spirosoma linguale) - STRING interaction network
"Slin_5058" - RagB/SusD domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5058RagB/SusD domain-containing protein (493 aa)    
Predicted Functional Partners:
Slin_5059
TonB-dependent receptor plug (1047 aa)
 
     
  0.902
Slin_6529
TonB-dependent receptor plug (1075 aa)
 
     
  0.789
Slin_2764
TonB-dependent receptor plug (1103 aa)
 
     
  0.787
Slin_1220
TonB-dependent receptor plug (1137 aa)
 
     
  0.786
Slin_5419
TonB-dependent receptor plug (1102 aa)
 
     
  0.783
Slin_6433
TonB-dependent receptor plug (1013 aa)
 
     
  0.782
Slin_3390
TonB-dependent receptor plug (1150 aa)
 
     
  0.776
Slin_5655
TonB-dependent receptor plug (1164 aa)
 
     
  0.768
Slin_1425
TonB-dependent receptor plug (1168 aa)
 
     
  0.760
Slin_4042
TonB-dependent receptor (1026 aa)
 
     
  0.758
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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