STRINGSTRING
Slin_5060 protein (Spirosoma linguale) - STRING interaction network
"Slin_5060" - ASPIC/UnbV domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5060ASPIC/UnbV domain-containing protein (1161 aa)    
Predicted Functional Partners:
Slin_5061
RagB/SusD domain-containing protein (529 aa)
 
          0.862
Slin_5055
PA-phosphatase-like phosphoesterase (451 aa)
 
          0.837
Slin_5062
TonB-dependent receptor plug (1037 aa)
 
          0.789
Slin_3033
Hypothetical protein (440 aa)
 
          0.778
Slin_5972
Hypothetical protein (471 aa)
   
          0.778
Slin_4663
PA-phosphatase-like phosphoesterase (515 aa)
 
          0.762
Slin_4660
PA-phosphatase-like phosphoesterase (502 aa)
 
          0.738
Slin_4733
Hypothetical protein (506 aa)
   
          0.655
Slin_1897
Hypothetical protein (340 aa)
   
          0.635
Slin_3038
Hypothetical protein (524 aa)
   
          0.586
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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